PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 166aa    MW: 18666.4 Da    PI: 6.8941
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018222genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.81.4e-276931100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk            ++p e+r da+sslv+eA+ar+rdPvyG+vg i+ lq q++ql+ +la+++
  DCAR_018222   6 PCASCKLLRRRCAKDCIFAPYFPPHDPHKFAIVHK------------EIPVEQRGDAVSSLVFEANARLRDPVYGCVGAISYLQTQVSQLQMQLAVAE 91 
                  7********************************97............89**********************************************998 PP

       DUF260  99 ee 100
                  +e
  DCAR_018222  92 AE 93 
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.246594IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-27691IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVGASPCASC KLLRRRCAKD CIFAPYFPPH DPHKFAIVHK EIPVEQRGDA VSSLVFEANA  60
RLRDPVYGCV GAISYLQTQV SQLQMQLAVA EAEILCLQMQ QQQQQQSQQP NIPITAQQMM  120
MIPDDKSLHL STNNFDYSLQ QQYLNFGPTS NIVMQDPPKR ESLWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024897.13e-72PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW35e-62LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A068ULU31e-73A0A068ULU3_COFCA; Uncharacterized protein
STRINGPOPTR_0001s28840.12e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-59LBD family protein